tv.qiagenbioinformatics.com marketingbiox@qiagen.com https://tv.qiagenbioinformatics.com Watch tutorials, interviews and much more on our web based TV channel! en-us Visualplatform http://blogs.law.harvard.edu/tech/rss tv.qiagenbioinformatics.com CLC bio TV Watch tutorials, interviews and much more on our web based TV channel! clc bio tv, bioinformatics, genomics, research episodic no https://tv.qiagenbioinformatics.com/files/rv0.0/sitelogo.gif https://tv.qiagenbioinformatics.com http://tv.qiagenbioinformatics.com/photo/115152885/rna-seq-data-analysis-using-qiagen-1 <p><p>For your RNA-seq data, you will learn how to:</p><p>• Import FASTQ files, cell matrix files and metadata</p><p>• Download and/or import reference and annotations files</p><p>• Map reads to a reference genome</p><p>• Generate gene and transcript counts</p><p>• QC reports displaying % mapped reads etc.</p><p>• Generate visualizations of results, such as heatmaps, differential expression tables, PCA/PCOA plots, Venn diagrams, Sankey plot and more</p><p>• Easily customize RNA-seq workflows</p><p>• Export publication-quality graphics, tables and reports</p><p>Per audience request</p><p>• Send differential expression tables to QIAGEN Ingenuity Pathway Analysis directly from QIAGEN CLC Genomics Workbench to analyze and interpret relevant pathways</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/115152885/rna-seq-data-analysis-using-qiagen-1"><img src="http://tv.qiagenbioinformatics.com/64968566/115152885/19c618ac29c1f5fbc7fd17e2cf95209d/standard/download-10-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/115152885 Tue, 12 Aug 2025 16:52:27 GMT RNA-seq data analysis using QIAGEN CLC Genomics Workbench For your RNA-seq data, you will learn how to:• Import FASTQ files, cell matrix files and metadata• Download and/or import reference and annotations files• Map reads to a reference genome• Generate gene and transcript counts• QC reports displaying % mapped reads etc.• Generate visualizations of results, such as heatmaps, differential expression tables, PCA/PCOA plots, Venn diagrams, Sankey plot and more• Easily customize RNA-seq workflows• Export publication-quality graphics, tables and reportsPer audience request• Send differential expression tables to QIAGEN Ingenuity Pathway Analysis directly from QIAGEN CLC Genomics Workbench to analyze and interpret relevant pathways For your RNA-seq data, you will learn how to:• Import FASTQ files, cell matrix files and metadata• Download and/or import reference and annotations files• Map reads to a reference genome• Generate gene and transcript counts• QC reports displaying... tv.qiagenbioinformatics.com 01:32:32 <p><p>For your RNA-seq data, you will learn how to:</p><p>• Import FASTQ files, cell matrix files and metadata</p><p>• Download and/or import reference and annotations files</p><p>• Map reads to a reference genome</p><p>• Generate gene and transcript counts</p><p>• QC reports displaying % mapped reads etc.</p><p>• Generate visualizations of results, such as heatmaps, differential expression tables, PCA/PCOA plots, Venn diagrams, Sankey plot and more</p><p>• Easily customize RNA-seq workflows</p><p>• Export publication-quality graphics, tables and reports</p><p>Per audience request</p><p>• Send differential expression tables to QIAGEN Ingenuity Pathway Analysis directly from QIAGEN CLC Genomics Workbench to analyze and interpret relevant pathways</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/115152885/rna-seq-data-analysis-using-qiagen-1"><img src="http://tv.qiagenbioinformatics.com/64968566/115152885/19c618ac29c1f5fbc7fd17e2cf95209d/standard/download-10-thumbnail.jpg" width="75" height=""/></a></p> clc genomics workbench http://tv.qiagenbioinformatics.com/photo/59979586/qiagen-clc-genomics-workbench-20-2 <p>In this webinar, Leif Schauser, Ph.D., Director Product Management Genome Analysis, will review the latest features in the new QIAGEN CLC Genomics Workbench 20. The following topics will be covered:<br> • One-click solutions and expert tools for NGS data analysis<br> • Working with reads from various platforms (Illumina, IonTorrent, Oxford Nanopore, Pacific Biosciences, BGI/MGI)<br> • Tailored solutions for RNA-seq, DNA-seq and methylation<br> • Efficient algorithms for read trimming, mapping, de novo assembly and variant calling<br> • Effective management of reference data<br> • Scalable processing of many samples, with advanced workflow and reporting capabilities<br> • Easy installation on Windows, Mac and Linux<br><br><p>Interested in learning more?</p><p><b>Click&nbsp;</b><b><u><a href="https://digitalinsights.qiagen.com/products-overview/analysis-and-visualization/qiagen-clc-genomics-workbench?cmpid=BIOX_WEB_BioX_20200128_tv.qiagenbioinformatics_Webinar_BioxBA_Must_Win_1_BIOX">here</a></u></b></p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/59979586/qiagen-clc-genomics-workbench-20-2"><img src="http://tv.qiagenbioinformatics.com/49543314/59979586/8b3e66765e2e33a727d4ee57792d20f8/standard/download-3-thumbnail.jpg" width="600" height="375"/></a></p> http://tv.qiagenbioinformatics.com/photo/59979586 Thu, 10 Jul 2025 15:51:32 GMT QIAGEN CLC Genomics Workbench 20 – scalable desktop software for NGS data... In this webinar, Leif Schauser, Ph.D., Director Product Management Genome Analysis, will review the latest features in the new QIAGEN CLC Genomics Workbench 20. The following topics will be covered: • One-click solutions and expert tools for NGS data analysis • Working with reads from various platforms (Illumina, IonTorrent, Oxford Nanopore, Pacific Biosciences, BGI/MGI) • Tailored solutions for RNA-seq, DNA-seq and methylation • Efficient algorithms for read trimming, mapping, de novo assembly and variant calling • Effective management of reference data • Scalable processing of many samples, with advanced workflow and reporting capabilities • Easy installation on Windows, Mac and LinuxInterested in learning more?Clickhere In this webinar, Leif Schauser, Ph.D., Director Product Management Genome Analysis, will review the latest features in the new QIAGEN CLC Genomics Workbench 20. The following topics will be covered: • One-click solutions and expert tools for NGS... tv.qiagenbioinformatics.com 53:47 <p>In this webinar, Leif Schauser, Ph.D., Director Product Management Genome Analysis, will review the latest features in the new QIAGEN CLC Genomics Workbench 20. The following topics will be covered:<br> • One-click solutions and expert tools for NGS data analysis<br> • Working with reads from various platforms (Illumina, IonTorrent, Oxford Nanopore, Pacific Biosciences, BGI/MGI)<br> • Tailored solutions for RNA-seq, DNA-seq and methylation<br> • Efficient algorithms for read trimming, mapping, de novo assembly and variant calling<br> • Effective management of reference data<br> • Scalable processing of many samples, with advanced workflow and reporting capabilities<br> • Easy installation on Windows, Mac and Linux<br><br><p>Interested in learning more?</p><p><b>Click&nbsp;</b><b><u><a href="https://digitalinsights.qiagen.com/products-overview/analysis-and-visualization/qiagen-clc-genomics-workbench?cmpid=BIOX_WEB_BioX_20200128_tv.qiagenbioinformatics_Webinar_BioxBA_Must_Win_1_BIOX">here</a></u></b></p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/59979586/qiagen-clc-genomics-workbench-20-2"><img src="http://tv.qiagenbioinformatics.com/49543314/59979586/8b3e66765e2e33a727d4ee57792d20f8/standard/download-3-thumbnail.jpg" width="600" height="375"/></a></p> clc clc genomics workbench tutorial clc webinar discovery gene regulation genomics workbench webinar http://tv.qiagenbioinformatics.com/photo/114020986/chip-seq-histone-seq-and-methyl-seq <p><p>This training will focus on how a user can analyze their epigenomics data using QIAGEN CLC Genomics Workbench.</p><p>Specifically, the trainer will cover how to</p><p>• Import the raw sequencing data</p><p>• Download or import reference, metadata and other needed files</p><p>• Mapping reads to a reference genome</p><p>• Calling and visualizing peaks</p><p>• Export graphical and tabular results</p><p>In addition, per registrant feedback and the trainer discretion additional topics such as customizing the workflow, how to send data to Ingenuity Pathway Analysis and more may be covered.</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/114020986/chip-seq-histone-seq-and-methyl-seq"><img src="http://tv.qiagenbioinformatics.com/64968577/114020986/bb27fe14edf576119c4befd8135e1caa/standard/download-9-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/114020986 Thu, 26 Jun 2025 22:42:47 GMT ChIP-seq, Histone-seq and Methyl-seq analysis using CLC Genomics Workbench This training will focus on how a user can analyze their epigenomics data using QIAGEN CLC Genomics Workbench.Specifically, the trainer will cover how to• Import the raw sequencing data• Download or import reference, metadata and other needed files• Mapping reads to a reference genome• Calling and visualizing peaks• Export graphical and tabular resultsIn addition, per registrant feedback and the trainer discretion additional topics such as customizing the workflow, how to send data to Ingenuity Pathway Analysis and more may be covered. This training will focus on how a user can analyze their epigenomics data using QIAGEN CLC Genomics Workbench.Specifically, the trainer will cover how to• Import the raw sequencing data• Download or import reference, metadata and other needed... tv.qiagenbioinformatics.com 01:30:17 <p><p>This training will focus on how a user can analyze their epigenomics data using QIAGEN CLC Genomics Workbench.</p><p>Specifically, the trainer will cover how to</p><p>• Import the raw sequencing data</p><p>• Download or import reference, metadata and other needed files</p><p>• Mapping reads to a reference genome</p><p>• Calling and visualizing peaks</p><p>• Export graphical and tabular results</p><p>In addition, per registrant feedback and the trainer discretion additional topics such as customizing the workflow, how to send data to Ingenuity Pathway Analysis and more may be covered.</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/114020986/chip-seq-histone-seq-and-methyl-seq"><img src="http://tv.qiagenbioinformatics.com/64968577/114020986/bb27fe14edf576119c4befd8135e1caa/standard/download-9-thumbnail.jpg" width="75" height=""/></a></p> clc genomics workbench clc webinar discovery genomics workbench webinar http://tv.qiagenbioinformatics.com/photo/113782642/de-novo-assembly-blast-and-genome-2 <p><p>This webinar will introduce users to the tools available for short reads (Illumina) as well as long reads (Oxford Nanopore, Pac Bio) de novo assembly in CLC Genomics Workbench. It will also go over other useful functionalities such as BLAST and genome finishing.</p><p>Participants will learn the following:</p><p>o Download and install needed plugins.</p><p>o Import data required for the analysis.</p><p>o Run the de novo assembly workflow.</p><p>o For long reads, improve a de novo assembly by polishing with short, high-quality reads.</p><p>o Map reads to a reference and visualize an assembly.</p><p>o For long reads, correct raw long reads for further analysis.</p><p>o Use BLAST to investigate the contigs.</p><p>o Analyze and assemble contigs through Genome Finishing tools.</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/113782642/de-novo-assembly-blast-and-genome-2"><img src="http://tv.qiagenbioinformatics.com/64968558/113782642/cf13d497a9767897484ef79a18ab8f51/standard/download-9-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/113782642 Wed, 18 Jun 2025 15:20:48 GMT De novo assembly, BLAST and genome finishing using CLC Genomics Workbench This webinar will introduce users to the tools available for short reads (Illumina) as well as long reads (Oxford Nanopore, Pac Bio) de novo assembly in CLC Genomics Workbench. It will also go over other useful functionalities such as BLAST and genome finishing.Participants will learn the following:o Download and install needed plugins.o Import data required for the analysis.o Run the de novo assembly workflow.o For long reads, improve a de novo assembly by polishing with short, high-quality reads.o Map reads to a reference and visualize an assembly.o For long reads, correct raw long reads for further analysis.o Use BLAST to investigate the contigs.o Analyze and assemble contigs through Genome Finishing tools. This webinar will introduce users to the tools available for short reads (Illumina) as well as long reads (Oxford Nanopore, Pac Bio) de novo assembly in CLC Genomics Workbench. It will also go over other useful functionalities such as BLAST and... tv.qiagenbioinformatics.com 01:27:23 <p><p>This webinar will introduce users to the tools available for short reads (Illumina) as well as long reads (Oxford Nanopore, Pac Bio) de novo assembly in CLC Genomics Workbench. It will also go over other useful functionalities such as BLAST and genome finishing.</p><p>Participants will learn the following:</p><p>o Download and install needed plugins.</p><p>o Import data required for the analysis.</p><p>o Run the de novo assembly workflow.</p><p>o For long reads, improve a de novo assembly by polishing with short, high-quality reads.</p><p>o Map reads to a reference and visualize an assembly.</p><p>o For long reads, correct raw long reads for further analysis.</p><p>o Use BLAST to investigate the contigs.</p><p>o Analyze and assemble contigs through Genome Finishing tools.</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/113782642/de-novo-assembly-blast-and-genome-2"><img src="http://tv.qiagenbioinformatics.com/64968558/113782642/cf13d497a9767897484ef79a18ab8f51/standard/download-9-thumbnail.jpg" width="75" height=""/></a></p> clc clc genomics workbench clc webinar discovery genomics workbench webinar http://tv.qiagenbioinformatics.com/photo/113583070/rna-seq-analysis-for-long-reads <p><p>This training will focus on how a user can analyze their long reads data using QIAGEN CLC Genomics Workbench.</p><p>Specifically, the trainer will cover how to</p><p>• Import the long reads data</p><p>• Download or import reference, metadata and other needed files</p><p>• Process such data and generate downstream RNA-seq outputs</p><p>• Export high resolution graphics and tables</p><p>In addition, per registrant feedback and trainer discretion additional topics such as customizing the workflow, how to send data to Ingenuity Pathway Analysis, Sankey plot and more may be covered.</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/113583070/rna-seq-analysis-for-long-reads"><img src="http://tv.qiagenbioinformatics.com/64968580/113583070/70a7612aac820ed74306a947b2056155/standard/download-9-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/113583070 Tue, 10 Jun 2025 16:43:30 GMT RNA-seq analysis for long reads This training will focus on how a user can analyze their long reads data using QIAGEN CLC Genomics Workbench.Specifically, the trainer will cover how to• Import the long reads data• Download or import reference, metadata and other needed files• Process such data and generate downstream RNA-seq outputs• Export high resolution graphics and tablesIn addition, per registrant feedback and trainer discretion additional topics such as customizing the workflow, how to send data to Ingenuity Pathway Analysis, Sankey plot and more may be covered. This training will focus on how a user can analyze their long reads data using QIAGEN CLC Genomics Workbench.Specifically, the trainer will cover how to• Import the long reads data• Download or import reference, metadata and other needed files•... tv.qiagenbioinformatics.com 01:21:02 <p><p>This training will focus on how a user can analyze their long reads data using QIAGEN CLC Genomics Workbench.</p><p>Specifically, the trainer will cover how to</p><p>• Import the long reads data</p><p>• Download or import reference, metadata and other needed files</p><p>• Process such data and generate downstream RNA-seq outputs</p><p>• Export high resolution graphics and tables</p><p>In addition, per registrant feedback and trainer discretion additional topics such as customizing the workflow, how to send data to Ingenuity Pathway Analysis, Sankey plot and more may be covered.</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/113583070/rna-seq-analysis-for-long-reads"><img src="http://tv.qiagenbioinformatics.com/64968580/113583070/70a7612aac820ed74306a947b2056155/standard/download-9-thumbnail.jpg" width="75" height=""/></a></p> clc clc genomics workbench clc webinar discovery genomics genomics workbench webinar http://tv.qiagenbioinformatics.com/photo/113462010/shotgun-metagenomics-taxonomic <p><p>The QIAGEN CLC Microbial Genomics Module provides tools and workflows for many bioinformatics applications, including microbiome analysis, isolate characterization, functional metagenomics and antimicrobial resistance characterization. The module supports the analysis of bacterial, viral and eukaryotic (fungal) genomes and metagenomes.</p><p>This training focuses on whole shotgun metagenomics taxonomic profiling. Specifically, we’ll cover:</p><p>• An overview of the different tools within QIAGEN CLC Microbial Genomics Module and the research areas supported</p><p>• Taxonomic profiling</p><p>• Importing data</p><p>• Utilization of metadata</p><p>• Downloading and managing references</p><p>• Taxonomic profiling workflow (analytical pipeline)</p><p>• Downstream processing of abundance tables</p><p>• Creating and exporting high-quality graphics</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/113462010/shotgun-metagenomics-taxonomic"><img src="http://tv.qiagenbioinformatics.com/64968567/113462010/f2e16286585771756bf536364f99470d/standard/download-9-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/113462010 Tue, 03 Jun 2025 15:22:01 GMT Shotgun metagenomics taxonomic profiling using QIAGEN CLC Genomics Workbench The QIAGEN CLC Microbial Genomics Module provides tools and workflows for many bioinformatics applications, including microbiome analysis, isolate characterization, functional metagenomics and antimicrobial resistance characterization. The module supports the analysis of bacterial, viral and eukaryotic (fungal) genomes and metagenomes.This training focuses on whole shotgun metagenomics taxonomic profiling. Specifically, we’ll cover:• An overview of the different tools within QIAGEN CLC Microbial Genomics Module and the research areas supported• Taxonomic profiling• Importing data• Utilization of metadata• Downloading and managing references• Taxonomic profiling workflow (analytical pipeline)• Downstream processing of abundance tables• Creating and exporting high-quality graphics The QIAGEN CLC Microbial Genomics Module provides tools and workflows for many bioinformatics applications, including microbiome analysis, isolate characterization, functional metagenomics and antimicrobial resistance characterization. The module... tv.qiagenbioinformatics.com 01:32:06 <p><p>The QIAGEN CLC Microbial Genomics Module provides tools and workflows for many bioinformatics applications, including microbiome analysis, isolate characterization, functional metagenomics and antimicrobial resistance characterization. The module supports the analysis of bacterial, viral and eukaryotic (fungal) genomes and metagenomes.</p><p>This training focuses on whole shotgun metagenomics taxonomic profiling. Specifically, we’ll cover:</p><p>• An overview of the different tools within QIAGEN CLC Microbial Genomics Module and the research areas supported</p><p>• Taxonomic profiling</p><p>• Importing data</p><p>• Utilization of metadata</p><p>• Downloading and managing references</p><p>• Taxonomic profiling workflow (analytical pipeline)</p><p>• Downstream processing of abundance tables</p><p>• Creating and exporting high-quality graphics</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/113462010/shotgun-metagenomics-taxonomic"><img src="http://tv.qiagenbioinformatics.com/64968567/113462010/f2e16286585771756bf536364f99470d/standard/download-9-thumbnail.jpg" width="75" height=""/></a></p> clc genomics workbench clc webinar discovery genomics workbench webinar http://tv.qiagenbioinformatics.com/photo/112803888/multimodal-panels-analysis-using <p><p>This training will go over how QIAGEN CLC Genomics Workbench can be used to analyze Multimodal Panels data.</p><p>Trainer will cover</p><p>• How to import your data and metadata and download reference and other needed files</p><p>• How to use workflow and customize it</p><p>• How to visualize and export the results</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/112803888/multimodal-panels-analysis-using"><img src="http://tv.qiagenbioinformatics.com/64968561/112803888/c27582f7d64aa6a49401ba97ab29e544/standard/download-9-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/112803888 Thu, 15 May 2025 10:53:39 GMT Multimodal panels analysis using QIAGEN CLC Genomics Workbench This training will go over how QIAGEN CLC Genomics Workbench can be used to analyze Multimodal Panels data.Trainer will cover• How to import your data and metadata and download reference and other needed files• How to use workflow and customize it• How to visualize and export the results This training will go over how QIAGEN CLC Genomics Workbench can be used to analyze Multimodal Panels data.Trainer will cover• How to import your data and metadata and download reference and other needed files• How to use workflow and customize... tv.qiagenbioinformatics.com 01:24:43 <p><p>This training will go over how QIAGEN CLC Genomics Workbench can be used to analyze Multimodal Panels data.</p><p>Trainer will cover</p><p>• How to import your data and metadata and download reference and other needed files</p><p>• How to use workflow and customize it</p><p>• How to visualize and export the results</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/112803888/multimodal-panels-analysis-using"><img src="http://tv.qiagenbioinformatics.com/64968561/112803888/c27582f7d64aa6a49401ba97ab29e544/standard/download-9-thumbnail.jpg" width="75" height=""/></a></p> clc clc genomics workbench clc webinar discovery genomics genomics workbench webinar http://tv.qiagenbioinformatics.com/photo/112128080/dna-seq-whole-genome-whole-exome <p><p>In this training, we’ll go over how to easily perform DNA-seq (specifically whole genome, whole exome, DNA-panel and similar) analyses easily and effectively using QIAGEN CLC Genomics Workbench.</p><p>Together, we’ll explore:</p><p>• Read mapping</p><p>• Variant calling (SNPs, mutations, Indels and more)</p><p>• Annotations and filters</p><p>• Genome browser view</p><p>Please bring any questions you may have, and we will answer them during this training.</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/112128080/dna-seq-whole-genome-whole-exome"><img src="http://tv.qiagenbioinformatics.com/64968577/112128080/a9c3544f77900ab1918de27657b2250c/standard/download-9-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/112128080 Thu, 24 Apr 2025 15:29:42 GMT DNA-seq (whole genome, whole exome, DNA-panel) analyses using QIAGEN CLC... In this training, we’ll go over how to easily perform DNA-seq (specifically whole genome, whole exome, DNA-panel and similar) analyses easily and effectively using QIAGEN CLC Genomics Workbench.Together, we’ll explore:• Read mapping• Variant calling (SNPs, mutations, Indels and more)• Annotations and filters• Genome browser viewPlease bring any questions you may have, and we will answer them during this training. In this training, we’ll go over how to easily perform DNA-seq (specifically whole genome, whole exome, DNA-panel and similar) analyses easily and effectively using QIAGEN CLC Genomics Workbench.Together, we’ll explore:• Read mapping• Variant... tv.qiagenbioinformatics.com 01:20:56 <p><p>In this training, we’ll go over how to easily perform DNA-seq (specifically whole genome, whole exome, DNA-panel and similar) analyses easily and effectively using QIAGEN CLC Genomics Workbench.</p><p>Together, we’ll explore:</p><p>• Read mapping</p><p>• Variant calling (SNPs, mutations, Indels and more)</p><p>• Annotations and filters</p><p>• Genome browser view</p><p>Please bring any questions you may have, and we will answer them during this training.</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/112128080/dna-seq-whole-genome-whole-exome"><img src="http://tv.qiagenbioinformatics.com/64968577/112128080/a9c3544f77900ab1918de27657b2250c/standard/download-9-thumbnail.jpg" width="75" height=""/></a></p> clc genomics workbench clc webinar discovery genomics workbench webinar http://tv.qiagenbioinformatics.com/photo/112027053/isolate-typing-strain-2 <p><p>QIAGEN CLC Genomics Workbench provides tools and workflows for a broad range of bioinformatics applications, including microbiome analysis, isolate characterization through SNP and K-mer trees using NGS data, and antimicrobial resistance characterization. CLC Genomics Workbench is widely used for analyses of bacterial, viral and eukaryotic (fungal) genomes and metagenomes.</p><p>&nbsp;</p><p>Topics covered in this webinar include:</p><p>&nbsp;</p><p>I.&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; Overview of different tools within MGM application and research areas supported</p><p>II.&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; II. Focused review of isolate typing and characterization</p><p>III.&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; a. How to import data</p><p>IV.&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; b. Using metadata</p><p>V.&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; c. Downloading and managing references, including databases of isolates/resistances/MLST</p><p>VI.&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; d. Walkthrough of the "Type a Known Species" workflow and review of details for each isolate</p><p>VII.&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; e. Creating SNP profiles to specific reference</p><p>VIII.&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; f. Generate a SNP tree for isolate comparison</p><p>IX.&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; g. Export tabular and high-quality graphical outputs in wide range of file formats</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/112027053/isolate-typing-strain-2"><img src="http://tv.qiagenbioinformatics.com/64968556/112027053/a8b8999b44e46243d811fdddcf299667/standard/download-9-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/112027053 Tue, 22 Apr 2025 08:00:36 GMT Isolate Typing, Strain Identification and Antimicrobial Resistance Analyses... QIAGEN CLC Genomics Workbench provides tools and workflows for a broad range of bioinformatics applications, including microbiome analysis, isolate characterization through SNP and K-mer trees using NGS data, and antimicrobial resistance characterization. CLC Genomics Workbench is widely used for analyses of bacterial, viral and eukaryotic (fungal) genomes and metagenomes.Topics covered in this webinar include:I. Overview of different tools within MGM application and research areas supportedII. II. Focused review of isolate typing and characterizationIII. a. How to import dataIV. b. Using metadataV. c. Downloading and managing references, including databases of isolates/resistances/MLSTVI. d. Walkthrough of the "Type a Known Species" workflow and review of details for each isolateVII. e. Creating SNP profiles to specific referenceVIII. f. Generate a SNP tree for isolate comparisonIX. g. Export tabular and high-quality graphical outputs in wide range of file formats QIAGEN CLC Genomics Workbench provides tools and workflows for a broad range of bioinformatics applications, including microbiome analysis, isolate characterization through SNP and K-mer trees using NGS data, and antimicrobial resistance... tv.qiagenbioinformatics.com 01:27:26 <p><p>QIAGEN CLC Genomics Workbench provides tools and workflows for a broad range of bioinformatics applications, including microbiome analysis, isolate characterization through SNP and K-mer trees using NGS data, and antimicrobial resistance characterization. CLC Genomics Workbench is widely used for analyses of bacterial, viral and eukaryotic (fungal) genomes and metagenomes.</p><p>&nbsp;</p><p>Topics covered in this webinar include:</p><p>&nbsp;</p><p>I.&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; Overview of different tools within MGM application and research areas supported</p><p>II.&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; II. Focused review of isolate typing and characterization</p><p>III.&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; a. How to import data</p><p>IV.&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; b. Using metadata</p><p>V.&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; c. Downloading and managing references, including databases of isolates/resistances/MLST</p><p>VI.&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; d. Walkthrough of the "Type a Known Species" workflow and review of details for each isolate</p><p>VII.&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; e. Creating SNP profiles to specific reference</p><p>VIII.&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; f. Generate a SNP tree for isolate comparison</p><p>IX.&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; g. Export tabular and high-quality graphical outputs in wide range of file formats</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/112027053/isolate-typing-strain-2"><img src="http://tv.qiagenbioinformatics.com/64968556/112027053/a8b8999b44e46243d811fdddcf299667/standard/download-9-thumbnail.jpg" width="75" height=""/></a></p> clc genomics workbench clc webinar discovery genomics workbench webinar http://tv.qiagenbioinformatics.com/photo/111921666/workflow-construction-and-2 <p><p>Recently we have received some requests from CLC users (as well as CLC RNA-seq certification participants) to go over workflow construction and customization using CLC Genomics Workbench. Accordingly, we are hosting this training. The term workflow refers to bioinformatics secondary analysis pipelines such as DNA-seq, RNA-seq, OTU clustering, de novo assembly and more offered by CLC Genomics Workbench.</p><p>&nbsp;</p><p>In this training, the trainer will go over</p><p>• The basics of workflow construction</p><p>• How to visualize different steps of the workflow and customize different settings</p><p>• How to edit workflows (add/remove steps, lock/unlock parameters and more)</p><p>• How to share workflows</p><p>• How to install workflows</p><p>• Other workflow related topics</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/111921666/workflow-construction-and-2"><img src="http://tv.qiagenbioinformatics.com/64968561/111921666/fb432e1d4c8ac3887f5098a791ee5df9/standard/download-9-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/111921666 Wed, 16 Apr 2025 01:54:25 GMT Workflow construction and customization using QIAGEN CLC Genomics Workbench Recently we have received some requests from CLC users (as well as CLC RNA-seq certification participants) to go over workflow construction and customization using CLC Genomics Workbench. Accordingly, we are hosting this training. The term workflow refers to bioinformatics secondary analysis pipelines such as DNA-seq, RNA-seq, OTU clustering, de novo assembly and more offered by CLC Genomics Workbench.In this training, the trainer will go over• The basics of workflow construction• How to visualize different steps of the workflow and customize different settings• How to edit workflows (add/remove steps, lock/unlock parameters and more)• How to share workflows• How to install workflows• Other workflow related topics Recently we have received some requests from CLC users (as well as CLC RNA-seq certification participants) to go over workflow construction and customization using CLC Genomics Workbench. Accordingly, we are hosting this training. The term... tv.qiagenbioinformatics.com 01:03:10 <p><p>Recently we have received some requests from CLC users (as well as CLC RNA-seq certification participants) to go over workflow construction and customization using CLC Genomics Workbench. Accordingly, we are hosting this training. The term workflow refers to bioinformatics secondary analysis pipelines such as DNA-seq, RNA-seq, OTU clustering, de novo assembly and more offered by CLC Genomics Workbench.</p><p>&nbsp;</p><p>In this training, the trainer will go over</p><p>• The basics of workflow construction</p><p>• How to visualize different steps of the workflow and customize different settings</p><p>• How to edit workflows (add/remove steps, lock/unlock parameters and more)</p><p>• How to share workflows</p><p>• How to install workflows</p><p>• Other workflow related topics</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/111921666/workflow-construction-and-2"><img src="http://tv.qiagenbioinformatics.com/64968561/111921666/fb432e1d4c8ac3887f5098a791ee5df9/standard/download-9-thumbnail.jpg" width="75" height=""/></a></p> clc genomics workbench clc webinar discovery genomics workbench webinar http://tv.qiagenbioinformatics.com/photo/111603291/overlaying-expression-data-onto <p><p>In this video, we show how to color cells based on the expression of genes of interest in a UMAP.&nbsp; We also demonstrate how to examine expression values from the plot in a selected group of cells.</p><p>&nbsp;</p><p>Recent training&nbsp; webinar and tutorial that includes UMAP plot generation from single-cell data:</p><p>&nbsp;</p><p><a target="_blank" rel="noopener noreferrer nofollow" href="https://eur02.safelinks.protection.outlook.com/?url=https%3A%2F%2Ftv.qiagenbioinformatics.com%2Fvideo%2F109127416%2Fsingle-cell-rna-seq-cell-hashing-2&amp;data=05%7C02%7CMarcellin.Bayita%40qiagen.com%7C0ba1e0f5597e4b388bf108dd73564ab8%7Cdc81d03c239c4fd5a96f18a58773c86c%7C0%7C0%7C638793536640156915%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&amp;sdata=3VFYQc3K8207kBxc90bkq9fLmNykn0nwSV2ar9eB0xg%3D&amp;reserved=0">Single-cell RNA-seq, cell hashing and spatial transcriptomics</a></p><p><a target="_blank" rel="noopener noreferrer nofollow" href="https://eur02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fresources.qiagenbioinformatics.com%2Ftutorials%2Fsc-rna-velocity.pdf&amp;data=05%7C02%7CMarcellin.Bayita%40qiagen.com%7C0ba1e0f5597e4b388bf108dd73564ab8%7Cdc81d03c239c4fd5a96f18a58773c86c%7C0%7C0%7C638793536640182405%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&amp;sdata=96KaTp03lZdVwVioMnxCJpObOMYEVjIVMeI7FPpTCMI%3D&amp;reserved=0">Tutorial: Perform Single-Cell RNA Expression and Velocity Analysis</a></p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/111603291/overlaying-expression-data-onto"><img src="http://tv.qiagenbioinformatics.com/64968560/111603291/5f37f0cd3a59c1a153cb96711f883f83/standard/download-10-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/111603291 Thu, 03 Apr 2025 12:50:28 GMT Overlaying Expression Data onto UMAP Plots using the Single Cell Analysis... In this video, we show how to color cells based on the expression of genes of interest in a UMAP. We also demonstrate how to examine expression values from the plot in a selected group of cells.Recent training webinar and tutorial that includes UMAP plot generation from single-cell data:Single-cell RNA-seq, cell hashing and spatial transcriptomicsTutorial: Perform Single-Cell RNA Expression and Velocity Analysis In this video, we show how to color cells based on the expression of genes of interest in a UMAP. We also demonstrate how to examine expression values from the plot in a selected group of cells.Recent training webinar and tutorial that includes... tv.qiagenbioinformatics.com 05:36 <p><p>In this video, we show how to color cells based on the expression of genes of interest in a UMAP.&nbsp; We also demonstrate how to examine expression values from the plot in a selected group of cells.</p><p>&nbsp;</p><p>Recent training&nbsp; webinar and tutorial that includes UMAP plot generation from single-cell data:</p><p>&nbsp;</p><p><a target="_blank" rel="noopener noreferrer nofollow" href="https://eur02.safelinks.protection.outlook.com/?url=https%3A%2F%2Ftv.qiagenbioinformatics.com%2Fvideo%2F109127416%2Fsingle-cell-rna-seq-cell-hashing-2&amp;data=05%7C02%7CMarcellin.Bayita%40qiagen.com%7C0ba1e0f5597e4b388bf108dd73564ab8%7Cdc81d03c239c4fd5a96f18a58773c86c%7C0%7C0%7C638793536640156915%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&amp;sdata=3VFYQc3K8207kBxc90bkq9fLmNykn0nwSV2ar9eB0xg%3D&amp;reserved=0">Single-cell RNA-seq, cell hashing and spatial transcriptomics</a></p><p><a target="_blank" rel="noopener noreferrer nofollow" href="https://eur02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fresources.qiagenbioinformatics.com%2Ftutorials%2Fsc-rna-velocity.pdf&amp;data=05%7C02%7CMarcellin.Bayita%40qiagen.com%7C0ba1e0f5597e4b388bf108dd73564ab8%7Cdc81d03c239c4fd5a96f18a58773c86c%7C0%7C0%7C638793536640182405%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&amp;sdata=96KaTp03lZdVwVioMnxCJpObOMYEVjIVMeI7FPpTCMI%3D&amp;reserved=0">Tutorial: Perform Single-Cell RNA Expression and Velocity Analysis</a></p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/111603291/overlaying-expression-data-onto"><img src="http://tv.qiagenbioinformatics.com/64968560/111603291/5f37f0cd3a59c1a153cb96711f883f83/standard/download-10-thumbnail.jpg" width="75" height=""/></a></p> clc genomics workbench clc genomics workbench tutorial clc webinar discovery genomics workbench webinar workflow http://tv.qiagenbioinformatics.com/photo/111603704/finding-the-perfect-clc-tool-for <p><p>Here are some quick tips on locating tools in CLC Genomics Workbench version 25+</p><p></p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/111603704/finding-the-perfect-clc-tool-for"><img src="http://tv.qiagenbioinformatics.com/64968569/111603704/56af4fa5aceef1bd1322876c0469bef0/standard/download-8-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/111603704 Thu, 03 Apr 2025 12:49:05 GMT Finding the Perfect CLC Tool for your Workflow Here are some quick tips on locating tools in CLC Genomics Workbench version 25+ Here are some quick tips on locating tools in CLC Genomics Workbench version 25+ tv.qiagenbioinformatics.com 05:05 <p><p>Here are some quick tips on locating tools in CLC Genomics Workbench version 25+</p><p></p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/111603704/finding-the-perfect-clc-tool-for"><img src="http://tv.qiagenbioinformatics.com/64968569/111603704/56af4fa5aceef1bd1322876c0469bef0/standard/download-8-thumbnail.jpg" width="75" height=""/></a></p> clc genomics workbench clc genomics workbench tutorial clc webinar discovery genomics workbench webinar workflow http://tv.qiagenbioinformatics.com/photo/111603414/visualizing-spatial-transcriptomics <p><p>How to&nbsp; import and visualize spatial transcriptomics data in CLC</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/111603414/visualizing-spatial-transcriptomics"><img src="http://tv.qiagenbioinformatics.com/64968571/111603414/cfa24c027497e6aba9a998efbf58d7e6/standard/download-7-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/111603414 Thu, 03 Apr 2025 12:47:47 GMT Visualizing Spatial Transcriptomics Data in CLC Genomics Workbench How to import and visualize spatial transcriptomics data in CLC How to import and visualize spatial transcriptomics data in CLC tv.qiagenbioinformatics.com 07:53 <p><p>How to&nbsp; import and visualize spatial transcriptomics data in CLC</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/111603414/visualizing-spatial-transcriptomics"><img src="http://tv.qiagenbioinformatics.com/64968571/111603414/cfa24c027497e6aba9a998efbf58d7e6/standard/download-7-thumbnail.jpg" width="75" height=""/></a></p> clc genomics workbench clc genomics workbench tutorial clc webinar discovery genomics workbench webinar workflow http://tv.qiagenbioinformatics.com/photo/111603261/installing-clc-network-license <p><p>How to install the CLC network license manager, network licenses, and CLC Genomics Workbench on Windows</p><p></p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/111603261/installing-clc-network-license"><img src="http://tv.qiagenbioinformatics.com/64968567/111603261/0a7072f030f52db04221bdd4f258a266/standard/download-9-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/111603261 Thu, 03 Apr 2025 12:46:31 GMT Installing CLC Network License manager and Downloading Network Licenses on... How to install the CLC network license manager, network licenses, and CLC Genomics Workbench on Windows How to install the CLC network license manager, network licenses, and CLC Genomics Workbench on Windows tv.qiagenbioinformatics.com 04:20 <p><p>How to install the CLC network license manager, network licenses, and CLC Genomics Workbench on Windows</p><p></p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/111603261/installing-clc-network-license"><img src="http://tv.qiagenbioinformatics.com/64968567/111603261/0a7072f030f52db04221bdd4f258a266/standard/download-9-thumbnail.jpg" width="75" height=""/></a></p> clc genomics workbench clc genomics workbench tutorial clc webinar discovery genomics workbench webinar workflow http://tv.qiagenbioinformatics.com/photo/111603530/convenient-way-to-launch-analysis <p><p>In this video, we demonstrate the different tools that can be launched directly from the UMAP plot with a simple right-click.</p><p>&nbsp;</p><p>Recent training&nbsp; webinar and tutorial that includes UMAP plot generation from single-cell data:</p><p>&nbsp;</p><p><a target="_blank" rel="noopener noreferrer nofollow" href="https://eur02.safelinks.protection.outlook.com/?url=https%3A%2F%2Ftv.qiagenbioinformatics.com%2Fvideo%2F109127416%2Fsingle-cell-rna-seq-cell-hashing-2&amp;data=05%7C02%7CMarcellin.Bayita%40qiagen.com%7C0ba1e0f5597e4b388bf108dd73564ab8%7Cdc81d03c239c4fd5a96f18a58773c86c%7C0%7C0%7C638793536640200046%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&amp;sdata=GofUYtLm%2Bfq4qXyBRiYmlpHmqlnLippOnRZ1GTLuMf0%3D&amp;reserved=0">Single-cell RNA-seq, cell hashing and spatial transcriptomics</a></p><p><a target="_blank" rel="noopener noreferrer nofollow" href="https://eur02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fresources.qiagenbioinformatics.com%2Ftutorials%2Fsc-rna-velocity.pdf&amp;data=05%7C02%7CMarcellin.Bayita%40qiagen.com%7C0ba1e0f5597e4b388bf108dd73564ab8%7Cdc81d03c239c4fd5a96f18a58773c86c%7C0%7C0%7C638793536640215577%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&amp;sdata=h9unqCz4iAPRzonKgtqm%2F9AN6QD%2Fok0U9XoIFhjRldw%3D&amp;reserved=0">Tutorial: Perform Single-Cell RNA Expression and Velocity Analysis</a></p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/111603530/convenient-way-to-launch-analysis"><img src="http://tv.qiagenbioinformatics.com/64968567/111603530/2f0ce81a4a4d8fe05d3bcf68359ec6e0/standard/download-9-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/111603530 Thu, 03 Apr 2025 12:45:27 GMT Convenient Way To Launch Analysis Tools from UMAP Plots in the Single Cell... In this video, we demonstrate the different tools that can be launched directly from the UMAP plot with a simple right-click.Recent training webinar and tutorial that includes UMAP plot generation from single-cell data:Single-cell RNA-seq, cell hashing and spatial transcriptomicsTutorial: Perform Single-Cell RNA Expression and Velocity Analysis In this video, we demonstrate the different tools that can be launched directly from the UMAP plot with a simple right-click.Recent training webinar and tutorial that includes UMAP plot generation from single-cell data:Single-cell RNA-seq, cell... tv.qiagenbioinformatics.com 05:43 <p><p>In this video, we demonstrate the different tools that can be launched directly from the UMAP plot with a simple right-click.</p><p>&nbsp;</p><p>Recent training&nbsp; webinar and tutorial that includes UMAP plot generation from single-cell data:</p><p>&nbsp;</p><p><a target="_blank" rel="noopener noreferrer nofollow" href="https://eur02.safelinks.protection.outlook.com/?url=https%3A%2F%2Ftv.qiagenbioinformatics.com%2Fvideo%2F109127416%2Fsingle-cell-rna-seq-cell-hashing-2&amp;data=05%7C02%7CMarcellin.Bayita%40qiagen.com%7C0ba1e0f5597e4b388bf108dd73564ab8%7Cdc81d03c239c4fd5a96f18a58773c86c%7C0%7C0%7C638793536640200046%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&amp;sdata=GofUYtLm%2Bfq4qXyBRiYmlpHmqlnLippOnRZ1GTLuMf0%3D&amp;reserved=0">Single-cell RNA-seq, cell hashing and spatial transcriptomics</a></p><p><a target="_blank" rel="noopener noreferrer nofollow" href="https://eur02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fresources.qiagenbioinformatics.com%2Ftutorials%2Fsc-rna-velocity.pdf&amp;data=05%7C02%7CMarcellin.Bayita%40qiagen.com%7C0ba1e0f5597e4b388bf108dd73564ab8%7Cdc81d03c239c4fd5a96f18a58773c86c%7C0%7C0%7C638793536640215577%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&amp;sdata=h9unqCz4iAPRzonKgtqm%2F9AN6QD%2Fok0U9XoIFhjRldw%3D&amp;reserved=0">Tutorial: Perform Single-Cell RNA Expression and Velocity Analysis</a></p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/111603530/convenient-way-to-launch-analysis"><img src="http://tv.qiagenbioinformatics.com/64968567/111603530/2f0ce81a4a4d8fe05d3bcf68359ec6e0/standard/download-9-thumbnail.jpg" width="75" height=""/></a></p> clc genomics workbench clc genomics workbench tutorial clc webinar discovery genomics workbench webinar workflow http://tv.qiagenbioinformatics.com/photo/111603222/importing-single-cell-data-into-clc <p><p>Single cell expression matrices can be imported into CLC manually using the import single cell matrix tool or they can be imported automatically using workflows. <a target="_blank" rel="noopener noreferrer nofollow" href="https://resources.qiagenbioinformatics.com/manuals/clcsinglecellanalysis/current/index.php?manual=Import_Expression_Matrix.html">https://resources.qiagenbioinformatics.com/manuals/clcsinglecellanalysis/current/index.php?manual=Import_Expression_Matrix.html</a></p><p></p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/111603222/importing-single-cell-data-into-clc"><img src="http://tv.qiagenbioinformatics.com/64968559/111603222/60e198a5c546b2a5b7c6460c2faabfaa/standard/download-8-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/111603222 Thu, 03 Apr 2025 12:44:12 GMT Importing Single Cell Data into CLC Genomics Workbench Single cell expression matrices can be imported into CLC manually using the import single cell matrix tool or they can be imported automatically using workflows. https://resources.qiagenbioinformatics.com/manuals/clcsinglecellanalysis/current/index.php?manual=Import_Expression_Matrix.html Single cell expression matrices can be imported into CLC manually using the import single cell matrix tool or they can be imported automatically using workflows.... tv.qiagenbioinformatics.com 05:26 <p><p>Single cell expression matrices can be imported into CLC manually using the import single cell matrix tool or they can be imported automatically using workflows. <a target="_blank" rel="noopener noreferrer nofollow" href="https://resources.qiagenbioinformatics.com/manuals/clcsinglecellanalysis/current/index.php?manual=Import_Expression_Matrix.html">https://resources.qiagenbioinformatics.com/manuals/clcsinglecellanalysis/current/index.php?manual=Import_Expression_Matrix.html</a></p><p></p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/111603222/importing-single-cell-data-into-clc"><img src="http://tv.qiagenbioinformatics.com/64968559/111603222/60e198a5c546b2a5b7c6460c2faabfaa/standard/download-8-thumbnail.jpg" width="75" height=""/></a></p> clc genomics workbench clc genomics workbench tutorial clc webinar discovery genomics workbench webinar workflow http://tv.qiagenbioinformatics.com/photo/111603313/precise-workflow-path-control-using <p><p>Direct outputs through a workflow based on sequence count, coverage, and sample quality using branching elements <a target="_blank" rel="noopener noreferrer nofollow" href="https://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Branching_elements.html">https://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Branching_elements.html</a></p><p></p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/111603313/precise-workflow-path-control-using"><img src="http://tv.qiagenbioinformatics.com/64968578/111603313/26cef466e8248916485d8b3c5611990d/standard/download-9-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/111603313 Thu, 03 Apr 2025 12:42:35 GMT Precise Workflow Path Control using Branching Elements Direct outputs through a workflow based on sequence count, coverage, and sample quality using branching elements https://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Branching_elements.html Direct outputs through a workflow based on sequence count, coverage, and sample quality using branching elements https://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Branching_elements.html tv.qiagenbioinformatics.com 03:22 <p><p>Direct outputs through a workflow based on sequence count, coverage, and sample quality using branching elements <a target="_blank" rel="noopener noreferrer nofollow" href="https://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Branching_elements.html">https://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Branching_elements.html</a></p><p></p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/111603313/precise-workflow-path-control-using"><img src="http://tv.qiagenbioinformatics.com/64968578/111603313/26cef466e8248916485d8b3c5611990d/standard/download-9-thumbnail.jpg" width="75" height=""/></a></p> clc genomics workbench clc genomics workbench tutorial clc webinar discovery genomics workbench webinar workflow http://tv.qiagenbioinformatics.com/photo/111459662/wrapping-external-applications-into <p><p>QIAGEN’s CLC bioinformatics software portfolio provides user-friendly and intuitive solutions that run on any platform. This helps scientists to focus on the biology of their research without requiring them to write code, or compile and run software from the command line.</p><p>At QIAGEN we understand, however, that no single piece of software can meet the needs of every bioinformatics challenge. Sometimes, you need to supplement standard pipelines with your own scripts, open-source tools or third party applications from the command-line.</p><p>Accordingly, this training will go over:</p><p>• A quick introduction to CLC Genomics Workbench</p><p>• Wrapping an external application into the CLC environment</p><p>• Running external application alongside CLC tools and exporting results.</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/111459662/wrapping-external-applications-into"><img src="http://tv.qiagenbioinformatics.com/64968577/111459662/967022c24f0f2d268688351edf3da62d/standard/download-9-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/111459662 Thu, 27 Mar 2025 09:48:58 GMT Wrapping external applications into QIAGEN CLC Genomics Workbench QIAGEN’s CLC bioinformatics software portfolio provides user-friendly and intuitive solutions that run on any platform. This helps scientists to focus on the biology of their research without requiring them to write code, or compile and run software from the command line.At QIAGEN we understand, however, that no single piece of software can meet the needs of every bioinformatics challenge. Sometimes, you need to supplement standard pipelines with your own scripts, open-source tools or third party applications from the command-line.Accordingly, this training will go over:• A quick introduction to CLC Genomics Workbench• Wrapping an external application into the CLC environment• Running external application alongside CLC tools and exporting results. QIAGEN’s CLC bioinformatics software portfolio provides user-friendly and intuitive solutions that run on any platform. This helps scientists to focus on the biology of their research without requiring them to write code, or compile and run... tv.qiagenbioinformatics.com 01:19:48 <p><p>QIAGEN’s CLC bioinformatics software portfolio provides user-friendly and intuitive solutions that run on any platform. This helps scientists to focus on the biology of their research without requiring them to write code, or compile and run software from the command line.</p><p>At QIAGEN we understand, however, that no single piece of software can meet the needs of every bioinformatics challenge. Sometimes, you need to supplement standard pipelines with your own scripts, open-source tools or third party applications from the command-line.</p><p>Accordingly, this training will go over:</p><p>• A quick introduction to CLC Genomics Workbench</p><p>• Wrapping an external application into the CLC environment</p><p>• Running external application alongside CLC tools and exporting results.</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/111459662/wrapping-external-applications-into"><img src="http://tv.qiagenbioinformatics.com/64968577/111459662/967022c24f0f2d268688351edf3da62d/standard/download-9-thumbnail.jpg" width="75" height=""/></a></p> clc genomics workbench clc webinar discovery genomics workbench webinar http://tv.qiagenbioinformatics.com/photo/111412058/rna-seq-data-analysis-using-qiagen <p><p>For RNA-seq data, you will learn how to:</p><p>• Import FASTQ files, cell matrix files and metadata and how to download references</p><p>• Map reads to a reference genome and generate gene and transcript counts and QC reports displaying % mapped reads, knee plots, etc.</p><p>• Generate visualizations of results, such as heatmaps, differential expression tables, PCA/PCOA plots, Venn diagrams, sankey plot and others</p><p>• Easily customize RNA-seq workflows • Export publication-quality graphics, tables and reports</p><p>&nbsp;</p><p>Per audience request</p><p>• Send differential expression tables to QIAGEN Ingenuity Pathway Analysis directly from QIAGEN CLC Genomics Workbench to analyze and interpret relevant pathways</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/111412058/rna-seq-data-analysis-using-qiagen"><img src="http://tv.qiagenbioinformatics.com/64968558/111412058/c59d52ec71d28eb317e11066874f8e0d/standard/download-9-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/111412058 Tue, 25 Mar 2025 12:35:35 GMT RNA-seq data analysis using QIAGEN CLC Genomics Workbench For RNA-seq data, you will learn how to:• Import FASTQ files, cell matrix files and metadata and how to download references• Map reads to a reference genome and generate gene and transcript counts and QC reports displaying % mapped reads, knee plots, etc.• Generate visualizations of results, such as heatmaps, differential expression tables, PCA/PCOA plots, Venn diagrams, sankey plot and others• Easily customize RNA-seq workflows • Export publication-quality graphics, tables and reportsPer audience request• Send differential expression tables to QIAGEN Ingenuity Pathway Analysis directly from QIAGEN CLC Genomics Workbench to analyze and interpret relevant pathways For RNA-seq data, you will learn how to:• Import FASTQ files, cell matrix files and metadata and how to download references• Map reads to a reference genome and generate gene and transcript counts and QC reports displaying % mapped reads, knee... tv.qiagenbioinformatics.com 01:31:13 <p><p>For RNA-seq data, you will learn how to:</p><p>• Import FASTQ files, cell matrix files and metadata and how to download references</p><p>• Map reads to a reference genome and generate gene and transcript counts and QC reports displaying % mapped reads, knee plots, etc.</p><p>• Generate visualizations of results, such as heatmaps, differential expression tables, PCA/PCOA plots, Venn diagrams, sankey plot and others</p><p>• Easily customize RNA-seq workflows • Export publication-quality graphics, tables and reports</p><p>&nbsp;</p><p>Per audience request</p><p>• Send differential expression tables to QIAGEN Ingenuity Pathway Analysis directly from QIAGEN CLC Genomics Workbench to analyze and interpret relevant pathways</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/111412058/rna-seq-data-analysis-using-qiagen"><img src="http://tv.qiagenbioinformatics.com/64968558/111412058/c59d52ec71d28eb317e11066874f8e0d/standard/download-9-thumbnail.jpg" width="75" height=""/></a></p> clc genomics workbench clc webinar discovery genomics workbench webinar http://tv.qiagenbioinformatics.com/photo/111396229/analysis-of-microbial-communities <p><p>Geomicrobiology and petroleum microbiology are important fields that study how microbes interact with geological, geochemical, and petroleum processes. Understanding the composition of microbial communities can advance our knowledge of biotransformation, biodegradation, and bioremediation in industries such as environmental engineering, mining, and oil and gas.</p><p>QIAGEN CLC Genomics Workbench and the Microbial Genomics Module provide tools and workflows for a broad range of bioinformatics applications, including microbiome analysis, isolate characterization, and functional metagenomics. This webinar will focus on amplicon-based taxonomic profiling (16S/18S/ITS sequencing OTU clustering) using data collected from oil reservoirs. Specifically, the trainer will be:</p><p>• Highlighting different tools within the MGM application and research areas supported</p><p>• For taxonomic profiling:</p><p>o Importing data</p><p>o Utilizing metadata</p><p>o Downloading and managing references</p><p>o Launching the OTU clustering workflow (analytical pipeline)</p><p>• Downstream processing of abundance tables</p><p>• Creating and exporting high-quality graphics</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/111396229/analysis-of-microbial-communities"><img src="http://tv.qiagenbioinformatics.com/64968579/111396229/a7b65dd32152fde7707ba68ddef30395/standard/download-9-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/111396229 Tue, 25 Mar 2025 11:01:07 GMT Analysis of microbial communities for biotransformation, biodegradation and... Geomicrobiology and petroleum microbiology are important fields that study how microbes interact with geological, geochemical, and petroleum processes. Understanding the composition of microbial communities can advance our knowledge of biotransformation, biodegradation, and bioremediation in industries such as environmental engineering, mining, and oil and gas.QIAGEN CLC Genomics Workbench and the Microbial Genomics Module provide tools and workflows for a broad range of bioinformatics applications, including microbiome analysis, isolate characterization, and functional metagenomics. This webinar will focus on amplicon-based taxonomic profiling (16S/18S/ITS sequencing OTU clustering) using data collected from oil reservoirs. Specifically, the trainer will be:• Highlighting different tools within the MGM application and research areas supported• For taxonomic profiling:o Importing datao Utilizing metadatao Downloading and managing referenceso Launching the OTU clustering workflow (analytical pipeline)• Downstream processing of abundance tables• Creating and exporting high-quality graphics Geomicrobiology and petroleum microbiology are important fields that study how microbes interact with geological, geochemical, and petroleum processes. Understanding the composition of microbial communities can advance our knowledge of... tv.qiagenbioinformatics.com 59:55 <p><p>Geomicrobiology and petroleum microbiology are important fields that study how microbes interact with geological, geochemical, and petroleum processes. Understanding the composition of microbial communities can advance our knowledge of biotransformation, biodegradation, and bioremediation in industries such as environmental engineering, mining, and oil and gas.</p><p>QIAGEN CLC Genomics Workbench and the Microbial Genomics Module provide tools and workflows for a broad range of bioinformatics applications, including microbiome analysis, isolate characterization, and functional metagenomics. This webinar will focus on amplicon-based taxonomic profiling (16S/18S/ITS sequencing OTU clustering) using data collected from oil reservoirs. Specifically, the trainer will be:</p><p>• Highlighting different tools within the MGM application and research areas supported</p><p>• For taxonomic profiling:</p><p>o Importing data</p><p>o Utilizing metadata</p><p>o Downloading and managing references</p><p>o Launching the OTU clustering workflow (analytical pipeline)</p><p>• Downstream processing of abundance tables</p><p>• Creating and exporting high-quality graphics</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/111396229/analysis-of-microbial-communities"><img src="http://tv.qiagenbioinformatics.com/64968579/111396229/a7b65dd32152fde7707ba68ddef30395/standard/download-9-thumbnail.jpg" width="75" height=""/></a></p> clc genomics workbench clc webinar discovery genomics workbench webinar http://tv.qiagenbioinformatics.com/photo/110248152/long-reads-analysis-with-qiagen-clc-1 <p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/110248152/long-reads-analysis-with-qiagen-clc-1"><img src="http://tv.qiagenbioinformatics.com/64968567/110248152/cb6cb0ff5615c9b5bac6131032a096eb/standard/download-8-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/110248152 Tue, 25 Feb 2025 20:59:02 GMT Long reads analysis with QIAGEN CLC Genomics Workbench tv.qiagenbioinformatics.com 01:18:30 <p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/110248152/long-reads-analysis-with-qiagen-clc-1"><img src="http://tv.qiagenbioinformatics.com/64968567/110248152/cb6cb0ff5615c9b5bac6131032a096eb/standard/download-8-thumbnail.jpg" width="75" height=""/></a></p> clc genomics workbench clc webinar discovery genomics workbench webinar http://tv.qiagenbioinformatics.com/photo/109866108/workflow-construction-and-1 <p><p>Recently we have received some requests from CLC users (as well as CLC RNA-seq certification participants) to go over workflow construction and customization using CLC Genomics Workbench. Accordingly, we are hosting this training. The term workflow refers to bioinformatics secondary analysis pipelines such as DNA-seq, RNA-seq, OTU clustering, de novo assembly and more offered by CLC Genomics Workbench.</p> <p>&nbsp;</p> <p>In this training, the trainer will go over</p> <p>• The basics of workflow construction</p> <p>• How to visualize different steps of the workflow and customize different settings</p> <p>• How to edit workflows (add/remove steps, lock/unlock parameters and more)</p> <p>• How to share workflows</p> <p>• How to install workflows</p> <p>• Other workflow related topics</p> </p><p><a href="http://tv.qiagenbioinformatics.com/photo/109866108/workflow-construction-and-1"><img src="http://tv.qiagenbioinformatics.com/64968568/109866108/43ea983d95cb57cf0da270ffe0cbebcc/standard/download-8-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/109866108 Thu, 13 Feb 2025 16:06:53 GMT Workflow construction and customization using QIAGEN CLC Genomics Workbench Recently we have received some requests from CLC users (as well as CLC RNA-seq certification participants) to go over workflow construction and customization using CLC Genomics Workbench. Accordingly, we are hosting this training. The term workflow refers to bioinformatics secondary analysis pipelines such as DNA-seq, RNA-seq, OTU clustering, de novo assembly and more offered by CLC Genomics Workbench. In this training, the trainer will go over • The basics of workflow construction • How to visualize different steps of the workflow and customize different settings • How to edit workflows (add/remove steps, lock/unlock parameters and more) • How to share workflows • How to install workflows • Other workflow related topics Recently we have received some requests from CLC users (as well as CLC RNA-seq certification participants) to go over workflow construction and customization using CLC Genomics Workbench. Accordingly, we are hosting this training. The term... tv.qiagenbioinformatics.com 01:20:44 <p><p>Recently we have received some requests from CLC users (as well as CLC RNA-seq certification participants) to go over workflow construction and customization using CLC Genomics Workbench. Accordingly, we are hosting this training. The term workflow refers to bioinformatics secondary analysis pipelines such as DNA-seq, RNA-seq, OTU clustering, de novo assembly and more offered by CLC Genomics Workbench.</p> <p>&nbsp;</p> <p>In this training, the trainer will go over</p> <p>• The basics of workflow construction</p> <p>• How to visualize different steps of the workflow and customize different settings</p> <p>• How to edit workflows (add/remove steps, lock/unlock parameters and more)</p> <p>• How to share workflows</p> <p>• How to install workflows</p> <p>• Other workflow related topics</p> </p><p><a href="http://tv.qiagenbioinformatics.com/photo/109866108/workflow-construction-and-1"><img src="http://tv.qiagenbioinformatics.com/64968568/109866108/43ea983d95cb57cf0da270ffe0cbebcc/standard/download-8-thumbnail.jpg" width="75" height=""/></a></p> clc genomics workbench clc webinar discovery genomics workbench webinar http://tv.qiagenbioinformatics.com/photo/109117449/whats-new-in-qiagen-clc-genomics-3 <p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/109117449/whats-new-in-qiagen-clc-genomics-3"><img src="http://tv.qiagenbioinformatics.com/64968580/109117449/65e4e51417ec479ee2222d720144a732/standard/download-8-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/109117449 Sun, 26 Jan 2025 23:17:36 GMT What's new in QIAGEN CLC Genomics version 25 tv.qiagenbioinformatics.com 09:05 <p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/109117449/whats-new-in-qiagen-clc-genomics-3"><img src="http://tv.qiagenbioinformatics.com/64968580/109117449/65e4e51417ec479ee2222d720144a732/standard/download-8-thumbnail.jpg" width="75" height=""/></a></p> clc genomics workbench clc webinar discovery genomics workbench webinar http://tv.qiagenbioinformatics.com/photo/109127416/single-cell-rna-seq-cell-hashing-2 <p><p>In this training, you will learn how to analyze and interpret your own single cell RNA-seq data using QIAGEN CLC Genomics Workbench starting with either FASTQ or matrix files.</p> <p>Using CLC Genomics Workbench, you will learn how to perform secondary analysis on your single cell RNA-seq data. Specifically, you will learn how to:</p> <p>• Import your raw FASTQ or processed cell-matrix files.</p> <p>• Use pre-configured but customizable pipelines/workflows for single cell RNA-seq data.</p> <p>• Generate high resolution visuals and other files from your analysis for publications and biopharmaceutical discoveries.</p> <p>o Dimension reduction (UMAP, t-SNE) plots</p> <p>o Differential expression table for clusters, cell types, or combination of both</p> <p>o Heat map</p> <p>o Dot plots</p> <p>o Violin plots</p> <p>• Learn how to use “Create Cell Annotations from Hashtags” for cell hashing (i.e., CITE-seq).</p> <p>• Dive into spatial transcriptomic analysis, the latest feature in the single cell RNA-seq module.</p> </p><p><a href="http://tv.qiagenbioinformatics.com/photo/109127416/single-cell-rna-seq-cell-hashing-2"><img src="http://tv.qiagenbioinformatics.com/64968569/109127416/e97dd378f6b47b44af9de992c1247309/standard/download-8-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/109127416 Thu, 23 Jan 2025 13:42:27 GMT Single - cell RNA-seq, cell hashing and spatial transcriptomics In this training, you will learn how to analyze and interpret your own single cell RNA-seq data using QIAGEN CLC Genomics Workbench starting with either FASTQ or matrix files. Using CLC Genomics Workbench, you will learn how to perform secondary analysis on your single cell RNA-seq data. Specifically, you will learn how to: • Import your raw FASTQ or processed cell-matrix files. • Use pre-configured but customizable pipelines/workflows for single cell RNA-seq data. • Generate high resolution visuals and other files from your analysis for publications and biopharmaceutical discoveries. o Dimension reduction (UMAP, t-SNE) plots o Differential expression table for clusters, cell types, or combination of both o Heat map o Dot plots o Violin plots • Learn how to use “Create Cell Annotations from Hashtags” for cell hashing (i.e., CITE-seq). • Dive into spatial transcriptomic analysis, the latest feature in the single cell RNA-seq module. In this training, you will learn how to analyze and interpret your own single cell RNA-seq data using QIAGEN CLC Genomics Workbench starting with either FASTQ or matrix files. Using CLC Genomics Workbench, you will learn how to perform secondary... tv.qiagenbioinformatics.com 01:25:30 <p><p>In this training, you will learn how to analyze and interpret your own single cell RNA-seq data using QIAGEN CLC Genomics Workbench starting with either FASTQ or matrix files.</p> <p>Using CLC Genomics Workbench, you will learn how to perform secondary analysis on your single cell RNA-seq data. Specifically, you will learn how to:</p> <p>• Import your raw FASTQ or processed cell-matrix files.</p> <p>• Use pre-configured but customizable pipelines/workflows for single cell RNA-seq data.</p> <p>• Generate high resolution visuals and other files from your analysis for publications and biopharmaceutical discoveries.</p> <p>o Dimension reduction (UMAP, t-SNE) plots</p> <p>o Differential expression table for clusters, cell types, or combination of both</p> <p>o Heat map</p> <p>o Dot plots</p> <p>o Violin plots</p> <p>• Learn how to use “Create Cell Annotations from Hashtags” for cell hashing (i.e., CITE-seq).</p> <p>• Dive into spatial transcriptomic analysis, the latest feature in the single cell RNA-seq module.</p> </p><p><a href="http://tv.qiagenbioinformatics.com/photo/109127416/single-cell-rna-seq-cell-hashing-2"><img src="http://tv.qiagenbioinformatics.com/64968569/109127416/e97dd378f6b47b44af9de992c1247309/standard/download-8-thumbnail.jpg" width="75" height=""/></a></p> clc genomics workbench clc webinar discovery genomics workbench webinar http://tv.qiagenbioinformatics.com/photo/109120759/sanger-sequencing-alignment-cloning-1 <p><p>This training will be relevant to both QIAGEN Main and Genomics workbench users and prospects who are interested in below analytics.</p> <p>&nbsp;</p> <p>• Alignment and tree construction</p> <p>• Sanger sequencing analysis</p> <p>• Cloning and primer design</p> <p>• Other molecular biology tools</p> </p><p><a href="http://tv.qiagenbioinformatics.com/photo/109120759/sanger-sequencing-alignment-cloning-1"><img src="http://tv.qiagenbioinformatics.com/64968556/109120759/f8037b313be7f9b0e16d9d22153e0c85/standard/download-7-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/109120759 Thu, 23 Jan 2025 12:52:40 GMT Sanger sequencing, alignment, cloning, primer design and more using QIAGEN... This training will be relevant to both QIAGEN Main and Genomics workbench users and prospects who are interested in below analytics. • Alignment and tree construction • Sanger sequencing analysis • Cloning and primer design • Other molecular biology tools This training will be relevant to both QIAGEN Main and Genomics workbench users and prospects who are interested in below analytics. • Alignment and tree construction • Sanger sequencing analysis • Cloning and primer design • Other molecular... tv.qiagenbioinformatics.com 01:27:04 <p><p>This training will be relevant to both QIAGEN Main and Genomics workbench users and prospects who are interested in below analytics.</p> <p>&nbsp;</p> <p>• Alignment and tree construction</p> <p>• Sanger sequencing analysis</p> <p>• Cloning and primer design</p> <p>• Other molecular biology tools</p> </p><p><a href="http://tv.qiagenbioinformatics.com/photo/109120759/sanger-sequencing-alignment-cloning-1"><img src="http://tv.qiagenbioinformatics.com/64968556/109120759/f8037b313be7f9b0e16d9d22153e0c85/standard/download-7-thumbnail.jpg" width="75" height=""/></a></p> clc genomics workbench clc webinar discovery genomics workbench webinar http://tv.qiagenbioinformatics.com/photo/92574763/sanger-sequencing-alignment-cloning <p>If you're a QIAGEN CLC Main and/or Genomics Workbench user, or interested in learning about the below analytics, you won't want to miss this training: <p>• Alignment and tree construction<br> • Sanger sequencing analysis<br> • Cloning and primer design<br> • Other molecular biology tools</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/92574763/sanger-sequencing-alignment-cloning"><img src="http://tv.qiagenbioinformatics.com/64968569/92574763/1246c35c363a3e02f90e1609fbaf895c/standard/download-10-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/92574763 Wed, 17 Jan 2024 18:35:38 GMT Sanger sequencing, alignment, cloning, primer design and more using QIAGEN... If you're a QIAGEN CLC Main and/or Genomics Workbench user, or interested in learning about the below analytics, you won't want to miss this training: • Alignment and tree construction • Sanger sequencing analysis • Cloning and primer design • Other molecular biology tools If you're a QIAGEN CLC Main and/or Genomics Workbench user, or interested in learning about the below analytics, you won't want to miss this training: • Alignment and tree construction • Sanger sequencing analysis • Cloning and primer design •... tv.qiagenbioinformatics.com 01:36:03 <p>If you're a QIAGEN CLC Main and/or Genomics Workbench user, or interested in learning about the below analytics, you won't want to miss this training: <p>• Alignment and tree construction<br> • Sanger sequencing analysis<br> • Cloning and primer design<br> • Other molecular biology tools</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/92574763/sanger-sequencing-alignment-cloning"><img src="http://tv.qiagenbioinformatics.com/64968569/92574763/1246c35c363a3e02f90e1609fbaf895c/standard/download-10-thumbnail.jpg" width="75" height=""/></a></p> genomics workbench main workbench sanger http://tv.qiagenbioinformatics.com/photo/83037542/whats-new-in-qiagen-clc-genomics-1 <p>QIAGEN CLC Genomics Workbench version 23 is here with exciting updates we'd like to share with you. These include: <p>Our new QIAGEN CLC LightSpeed Module which provides the world’s fastest and cheapest whole genome sequencing (WGS) and (WES) analyses<br> Our new and improved QIAGEN CLC Cloud Module which provides direct access to your AWS S3 files and frees up your local workbench resources<br> New capabilities in QIAGEN CLC Microbial Genomics Module<br> New analyses in QIAGEN CLC Single Cell Analysis Module<br> New cloning tools<br> And many more new and improved workflow capabilities</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/83037542/whats-new-in-qiagen-clc-genomics-1"><img src="http://tv.qiagenbioinformatics.com/64968578/83037542/ce359af970f2509120c1bb92c4cab581/standard/download-7-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/83037542 Fri, 03 Feb 2023 04:39:22 GMT What’s new in QIAGEN CLC Genomics Workbench version 23 QIAGEN CLC Genomics Workbench version 23 is here with exciting updates we'd like to share with you. These include: Our new QIAGEN CLC LightSpeed Module which provides the world’s fastest and cheapest whole genome sequencing (WGS) and (WES) analyses Our new and improved QIAGEN CLC Cloud Module which provides direct access to your AWS S3 files and frees up your local workbench resources New capabilities in QIAGEN CLC Microbial Genomics Module New analyses in QIAGEN CLC Single Cell Analysis Module New cloning tools And many more new and improved workflow capabilities QIAGEN CLC Genomics Workbench version 23 is here with exciting updates we'd like to share with you. These include: Our new QIAGEN CLC LightSpeed Module which provides the world’s fastest and cheapest whole genome sequencing (WGS) and (WES)... tv.qiagenbioinformatics.com 43:30 <p>QIAGEN CLC Genomics Workbench version 23 is here with exciting updates we'd like to share with you. These include: <p>Our new QIAGEN CLC LightSpeed Module which provides the world’s fastest and cheapest whole genome sequencing (WGS) and (WES) analyses<br> Our new and improved QIAGEN CLC Cloud Module which provides direct access to your AWS S3 files and frees up your local workbench resources<br> New capabilities in QIAGEN CLC Microbial Genomics Module<br> New analyses in QIAGEN CLC Single Cell Analysis Module<br> New cloning tools<br> And many more new and improved workflow capabilities</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/83037542/whats-new-in-qiagen-clc-genomics-1"><img src="http://tv.qiagenbioinformatics.com/64968578/83037542/ce359af970f2509120c1bb92c4cab581/standard/download-7-thumbnail.jpg" width="75" height=""/></a></p> clc genomics workbench clc webinar discovery genomics workbench webinar http://tv.qiagenbioinformatics.com/photo/74718508/long-read-sequencing-analysis-in <p>This tutorial is an introduction to working with the tools in the Long Read Support (beta) plugin. The Long Read Support (beta) plugin is a collection of tools developed for working with long, error-prone reads such as those produced by the single-molecule sequencing technologies of Pacific Biosciences or Oxford Nanopore Technologies. <p>Participants will take away how to:</p> <p>• Download Plugin for Long read support<br> • Import data required for the analysis<br> • De novo assembly of a microbial sized genome using long, error-prone reads<br> • Improve a de novo assembly from long reads by polishing with short, high-quality reads<br> • Map long reads to a reference and visualizing an assembly<br> • Correct raw long reads for further analysis</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/74718508/long-read-sequencing-analysis-in"><img src="http://tv.qiagenbioinformatics.com/64968568/74718508/774fa2c025f181f102bfc872e909ccc4/standard/download-21-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/74718508 Thu, 24 Mar 2022 07:45:16 GMT Long-read sequencing analysis in the QIAGEN CLC Genomics Workbench This tutorial is an introduction to working with the tools in the Long Read Support (beta) plugin. The Long Read Support (beta) plugin is a collection of tools developed for working with long, error-prone reads such as those produced by the single-molecule sequencing technologies of Pacific Biosciences or Oxford Nanopore Technologies. Participants will take away how to: • Download Plugin for Long read support • Import data required for the analysis • De novo assembly of a microbial sized genome using long, error-prone reads • Improve a de novo assembly from long reads by polishing with short, high-quality reads • Map long reads to a reference and visualizing an assembly • Correct raw long reads for further analysis This tutorial is an introduction to working with the tools in the Long Read Support (beta) plugin. The Long Read Support (beta) plugin is a collection of tools developed for working with long, error-prone reads such as those produced by the... tv.qiagenbioinformatics.com 01:02:03 <p>This tutorial is an introduction to working with the tools in the Long Read Support (beta) plugin. The Long Read Support (beta) plugin is a collection of tools developed for working with long, error-prone reads such as those produced by the single-molecule sequencing technologies of Pacific Biosciences or Oxford Nanopore Technologies. <p>Participants will take away how to:</p> <p>• Download Plugin for Long read support<br> • Import data required for the analysis<br> • De novo assembly of a microbial sized genome using long, error-prone reads<br> • Improve a de novo assembly from long reads by polishing with short, high-quality reads<br> • Map long reads to a reference and visualizing an assembly<br> • Correct raw long reads for further analysis</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/74718508/long-read-sequencing-analysis-in"><img src="http://tv.qiagenbioinformatics.com/64968568/74718508/774fa2c025f181f102bfc872e909ccc4/standard/download-21-thumbnail.jpg" width="75" height=""/></a></p> clc genomics workbench tutorial FAS Training genomics workbench long reads